Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: ABG399

[Submit comment/correction]

Locus	ABG399
Type	RFLP
Synonym	Synonym ABG399A
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Consensus-3H -2.6 [ Show all 10 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QCww.StMo-3H
Map Data	Barley consensus [ Show all 10 ]
Probe	ABG399
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABG399 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	ABG399A ABG399B Xabg399
Probe	ABG399
Locus	ABG399B Xabg399-3 ABG399 ABG399A
Remarks	ABG399 has two inserts, 0.7 and 0.5 kb. The 0.5 kb fragment gives a Very clean blot with few bands and should be used for mapping. Harrington has a very strong band with this fragment that is absent in the other 3 parents. The 0.7 fragment gives multiple bands and messy blot. Will reclone the 0.5 kb band in a separate plasmid.
Type	Genomic
Linkage Group	3
Source Species	Hordeum vulgare
Source Germplasm	Shin Ebisu 16
Insert Size	0.5