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GrainGenes Marker Report: ABG461A

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Locus
ABG461A
Type
RFLP
Synonym
SynonymABG461
Chromosome
7H
Map
Hordeum-Bins-7H124.5
[ Show all 16 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 16 ]
Species
Hordeum vulgare
Probe
ABG461
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Close, Timothy J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG461
[ Show all 8 ]
Probe for Locus
ABG461
Locus
ABG461C
[ Show all 9 ]
Synonym
SynonymHAR35_21952
HAR35_3657
External Databases
DDBJ
EMBL
GenBank
General Remarks
Shin Ebisu16 gDNA
Type
Genomic
STS
PCR primers
TAG AAG TAG AAA AAG GAA CC
GAA GAA CAA CCA ATA GAA TG
STS primers
5' AGTTCAATGTTCACCACAGC
5' CAATGTACCGGACTATTTGG
STS size
283
Amplification Conditions
STS annealing temperature 58-60 oC
Sequence
L44024
ABG461
ABG461-5
ABG461-3
Linkage Group
Group 1
Source Species
Hordeum vulgare
Insert Size
1