Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: ABG654

[Submit comment/correction]

Locus	ABG654
Type	RFLP STS
Synonym	Synonym ABG654 POPA1_0446 POPA3_0842
Chromosome	3H 6H
Chromosome Arm	3HL
Map	Barley-consensus-2003-6H 22 [ Show all 16 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 16 ]
Probe	ABG654
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of ABG654 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs	ABG654A ABG654B
Probe	ABG654
Locus	ABG654B ABG654 ABG654A
Synonym	Synonym HAR35_15930 HAR35_16057
External Databases	DDBJ EMBL GenBank
Reference	Kleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Type	Genomic STS
PCR primers	AAGTTCGGATGGGACAAGAT ACAGCGGAGAAAAAGATACA
STS primers	5' CGGTGTTGACGATCACATCG 5' CAAGGTTCACAATGCTGGCC
STS size	156
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	L44082 ABG654
Linkage Group	3
Source Species	Hordeum vulgare
Source Germplasm	Shin Ebisu 16
Insert Size	0.5