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GrainGenes Marker Report: BG123a

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Locus	BG123a
Type	RFLP
Chromosome	2H
Map	Barley-consensus-2003-2H 161.5 [ Show all 15 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus 2 [ Show all 15 ]
Probe	BG123
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of BG123A in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs	BG123 BG123b Xbg123-2 Xcsu.BG123
Probe for Locus	BG123
Locus	Xbg123-2 [ Show all 8 ]
External Databases	DDBJ EMBL GenBank
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	CSU barley gDNA
Type	Genomic STS
PCR primers	TCC AAG AAG AGT CAA GTA AA CAA GCA GTA GGA ATA AGA AC
STS primers	5' CTGTGATTGACATGCCATTGC 5' TCGTTTACATCCCTCATTAGG
STS size	310
Amplification Conditions	STS annealing temperature 52-55 oC
Sequence	BG123
Linkage Group	2L & Group 7 2
Source Species	Hordeum vulgare
Insert Size	1.6