Query (optional)   in Class  

GrainGenes Marker Report: Bmac134

[Submit comment/correction]

Locus
Bmac134
Type
Microsatellite
Synonym
SynonymBmac0134
Chromosome
2H
Map
Barley-consensus-2003-2H3.4
Hordeum-IxF-SSR-2H0
Hordeum-Zhedar2-FHB-QTL-2H10
Hv-HNxH602-2H26.7
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Barley, HN x H602, Sato2009
Barley, Igri x Franka, SSR
Barley, Zhedar2, FHB QTL
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
Bmac134
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Langridge, Peter J.
Possible Orthologs
Bmac0134
Bmac134a
Bmac134b



Probe
Bmac134
Locus
Bmac0134
Bmac134
Bmac134a
Bmac134b
Synonym
Other nameBmac0134
Reference
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks
Insert contains repeat (AC)28
Quality = 2: Single product, relatively strong stutter bands
Diversity Index (DI) = 0.76
Type
PCR
SSR
PCR primers
5' CCAACTGAGTCGATCTCG 3'
5' CTTCGTTGCTTCTCTACCTT 3'
SSR size
148
Amplification Conditions
1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare