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GrainGenes Marker Report: Bmac209

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Locus	Bmac209
Type	Microsatellite
Synonym	Synonym Bmac0209
Chromosome	3H
Map	Hordeum-Consensus2006-DArT-3H 66.5 Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2006, DArT Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	Bmac209
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark	Number of populations contributing to the placement of Bmac209 in the Barley, Consensus 2006 DArT maps = 2
Possible Orthologs	Bmac0209
Probe	Bmac209
Locus	Bmac0209 Bmac209
Synonym	Other name Bmac0209
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks	Insert contains repeat (AC)13 Quality = 1: Single product, only weak stutter bands Diversity Index (DI) = 0.64
Type	PCR SSR
PCR primers	5' CTAGCAACTTCCCAACCGAC 3' 5' ATGCCTGTGTGTGGACCAT 3'
SSR size	176
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare