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GrainGenes Marker Report: Bmag0337

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Locus
Bmag0337
Type
Microsatellite
Synonym
SynonymBmag337
Chromosome
5H
Map
Barley, B73xCPI-5H52.5
[ Show all 11 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QTgw.pil-5H.1
Map Data
Barley, Abiotic QTL Consensus
[ Show all 11 ]
Species
Hordeum spontaneum
Hordeum vulgare
Probe
Bmag0337
Bmag337
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceMesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Lina x H. spontaneum
Insert contains repeat (AG)22
Polymorphic Information Content (PIC) = 0.67
Developing laboratory = SCRI (R. Waugh)
Possible Orthologs
Bmag337


Probe for Locus
Bmag337
Locus
Bmag0337
Bmag337
Synonym
Other nameBmag0337
Reference
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (AG)22
Quality = 1: Single product, only weak stutter bands
Diversity Index (DI) = 0.67
Type
PCR
SSR
PCR primers
5' ACAAAGAGGGAGTAGTACGC 3'
5' GACCCATGATATATGAAGATCA 3'
SSR size
145
Amplification Conditions
1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare