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GrainGenes Marker Report: Bmag0807

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Locus	Bmag0807
Type	Microsatellite
Chromosome	6H
Map	Barley, B73xCPI-6H 47.8 Barley-ConsensusFHB-6H 59.5 Hordeum-Consensus2007-SSR-6H 56.11 Hordeum-RxK-NTNB-6H 82 Hv-Integrated2009-6H 56.1
	[ Show Nearby Loci ]
QTL with Locus Marker	MetaQ.FHB_6H_3 MetaQ.HD_6H_4
Map Data	Barley, B73xCPI Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, Rika/Kombar NTNB, 6H
Species	Hordeum vulgare
Probe	Bmag0807 Bmag807
Reference	Abu Qamar M et al. (2008) A region of barley chromosome 6H harbors multiple major genes associated with net type net blotch resistance. Theoretical and Applied Genetics 117:1261-1270. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Possible Orthologs	Bmag807
Probe for Locus	Bmag807
Locus	Bmag0807 Bmag807
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks	Insert contains repeat (TC)18 Quality = 3: Strong major polymorphic product, with additional strong bands. Multi-locus or weak but scoreable products Diversity Index (DI) = 0.59
Type	PCR SSR
PCR primers	5' GGATATAAGGGTCCATAGCA 3' 5' AATTACATCAAATAGGCTCCA 3'
SSR size	111
Amplification Conditions	3 min 94C, 45 cycles of 1 min @94C, 1 min @55C, 2 min @72C, final extension of 10 min @72C. 25 microlitre reactions contained 125 nM of each primer.
Source Species	Hordeum vulgare