GrainGenes Marker Report: Bmag0841
Locus
Bmag0841
Type
Microsatellite
Chromosome
3H
Map
Barley, B73xCPI-3H 66.6 Barley-ConsensusFHB-3H 94.89 Hordeum-Consensus2007-SSR-3H 91.21 Hv-Integrated2009-3H 103.8
[ Show Nearby Loci ]
Map Data
Barley, B73xCPI Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009
Species
Hordeum vulgare
Probe
Bmag0841 Bmag841
Reference
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 6 ]
Possible Orthologs
Bmag841
Probe for Locus
Bmag841
Locus
Bmag0841 Bmag841
Synonym
See also Bmag0841
Reference
Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (TC)8(CCTC)4,(CT)11 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.62
Type
PCR SSR
PCR primers
5' GGAAAGTACTTCAAACCTGAA 3'
5' CTTACAAGATGATGAGAACGA 3'
SSR size
125
Amplification Conditions
3 min 94C, 45 cycles of 1 min @94C, 1 min @55C, 2 min @72C, final extension of 10 min @72C. 25 microlitre reactions contained 125 nM of each primer.
Source Species
Hordeum vulgare
GrainGenes Marker Report: Bmag0841
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