GrainGenes Marker Report: Bmag13
Locus
Bmag13
Type
Microsatellite
Synonym
Synonym Bmag0013
Chromosome
3H
Map
Barley-consensus-2003-3H 105.6 Hordeum-Consensus2006-DArT-3H 133.5 Hv-Consensus2006-Marcel-3H 113.7 Hv-HNxH602-3H 231.9
[ Show Nearby Loci ]
Map Data
Barley consensus 2003 Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
Bmag13
Reference
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of Bmag13 in the Barley, Consensus 2006 DArT maps = 3 Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Cebada Capa x SusPtrit
Possible Orthologs
Bmag0013 Bmag013
Probe
Bmag13
Locus
Bmag0013 Bmag13 Bmag013
Synonym
Other name Bmag0013
Reference
Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks
Insert contains repeat (CT)21 Quality = 4: Ladders of bands that are at equal intensity, but may contain scoreable weak products Diversity Index (DI) = 0.72
Type
PCR SSR
PCR primers
5' AAGGGGAATCAAAATGGGAG 3'
5' TCGAATAGGTCTCCGAAGAAA 3'
SSR size
155
Amplification Conditions
1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare
GrainGenes Marker Report: Bmag13
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