Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Bmag318

[Submit comment/correction]

Locus	Bmag318
Type	Microsatellite
Synonym	Synonym Bmag0318a
Chromosome	3H
Map	Hordeum-Consensus2006-DArT-3H 62.2
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2006, DArT
Probe	Bmag318
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark	Number of populations contributing to the placement of Bmag318 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs	Bmag0318 Bmag0318a Bmag0318b
Probe	Bmag318
Locus	Bmag0318b Bmag0318a Bmag318
Synonym	Other name Bmag0318
Reference	Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks	Insert contains repeat (AG)16 Quality = 3: Strong major polymorphic product, with additional strong bands. Multi-locus or weak but scoreable products
Type	PCR SSR
PCR primers	5' GATGAGGAGCAAGTAGTTCAC 3' 5' GATGGTAAGGGAAATACATCA 3'
SSR size	173
Amplification Conditions	1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare