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GrainGenes Marker Report: Bmag341

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Locus	Bmag341
Synonym	Synonym Bmag0341
Chromosome	7H
Map	Hordeum-Consensus2006-DArT-7H 87.4 Hv-Consensus2006-Marcel-7H 78.22
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Steptoe x Morex, SSR
Probe	Bmag341
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark	Number of populations contributing to the placement of Bmag341 in the Barley, Consensus 2006 DArT maps = 2 Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	Bmag0341 Bmag341a Bmag341b
Probe	Bmag341
Locus	Bmag0341 Bmag341 Bmag341a Bmag341b
Synonym	Other name Bmag0341
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks	Insert contains repeat (AG)14 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.62
Type	PCR SSR
PCR primers	5' TCATGGAGACCGTTGTAGT 3' 5' CCACAAGCCTCTGTTCTC 3' TCATGGAGACCGTTGTAGT CCACAAGCCTCTGTTCTC
SSR size	215
Amplification Conditions	1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species	Hordeum vulgare