GrainGenes Marker Report: Bmag378
Locus
Bmag378
Type
Microsatellite
Chromosome
2H
Map
Barley-consensus-2003-2H 72.8 Hordeum-Consensus2006-DArT-2H 84 Hordeum-Zhedar2-FHB-QTL-2H 104.1 Hv-Consensus2006-Marcel-2H 76.11
[ Show Nearby Loci ]
QTL with Locus Marker
QHD.dah-2H.1
Map Data
Barley consensus 2003 Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Zhedar2, FHB QTL
Probe
Bmag378
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of Bmag378 in the Barley, Consensus 2006 DArT maps = 2 Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Possible Orthologs
Bmag0378 Bmag0378.2H
Probe
Bmag378
Locus
Bmag0378 Bmag378
Synonym
Other name Bmag0378
Reference
Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks
Insert contains repeat (AG)14 Quality = 2: Single product, relatively strong stutter bands Diversity Index (DI) = 0.79
Type
PCR SSR
PCR primers
5' CTTTTGTTTCCGTAGCATCTA 3'
5' ATCCAACTATAGTAGCAAAGCC 3'
SSR size
147
Amplification Conditions
1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare
GrainGenes Marker Report: Bmag378
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