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GrainGenes Marker Report: CDO036

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Locus	CDO036
Type	RFLP
Synonym	Synonym gpa (Hordeum)
Chromosome	2H
Map	Barley-ConsensusFHB-2H 151.2 [ Show all 8 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 8 ]
Species	Hordeum vulgare
Probe	CDO36
Associated Gene	gpa (Hordeum)
Gene Class	Grandpa
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Kleinhofs A (1997) Integrating Barley RFLP and Classical Marker Maps: Barley Genetics Newsletter 27:105.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	CDO36 [ Show all 22 ]
Probe for Locus	CDO36
Locus	CDO36b [ Show all 23 ]
Synonym	Synonym HAR35_21104 HAR35_6860
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	TCAAGCGAACCATCAGCGT AGCCCTCGCCTAGCTCAG
Sequence	AA231751 AA231907 CDO36-5
Polymorphism	CDO36 EcoRI
Linkage Group	[b 1S]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.1
PCR size	1.1