GrainGenes Marker Report: CDO113
Locus
CDO113
Type
RFLP
Synonym
Synonym CDO113B
Chromosome
3H 5H
Chromosome Arm
5HL
Map
Barley-consensus-2003-3H 73.6
[ Show all 13 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 13 ]
Species
Avena sativa
Probe
CDO113
Homology
P5CS_ORYSA e-value: 2e-07 DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHETASE (P5CS) [INCLUDES: GLUTAMATE 5-KINASE (GAMMA-GLUTAMYL KINASE) (GK); GAMMA-GLUTAMYL PHOSPHATE REDUCTASE (GPR) (GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE) (GLUTAMYL-GAMMA-SEMIALDEHYDE DEHYDROGENASE)]
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO113 in the Barley, Consensus 2006 DArT maps = 1 aCDO113 in file - mistake Marker placement value = 5.76 cM on map Oat-KxO/2003-22_44+18 Marker is not a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
aCDO113
[ Show all 9 ]
Probe
CDO113
Locus
CDO113B
[ Show all 8 ]
Synonym
Synonym HAR35_15808 HAR35_16190
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439054 BE439101 CDO113_WHE2C0061 CDO113_WHE2C0062
Polymorphism
CDO113 DraI
Linkage Group
[b 7L] 3
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.8
PCR size
1.8
GrainGenes Marker Report: CDO113
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
| |||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
| ||||||
|
|