GrainGenes Marker Report: CDO1312
Locus
CDO1312
Type
RFLP
Synonym
Synonym POPA1_0334
Chromosome
1B 4H
Chromosome Arm
1BL
Map
Barley-consensus-2003-4H 69.5 Hordeum-Consensus2006-DArT-4H 122.6 Hordeum-CxH-4H 102.67 Hordeum-CxS-4H 125.12
[ Show Nearby Loci ]
Map Data
Barley consensus 2003 Barley, Consensus 2006, DArT Barley, CxH Barley, CxS Wheat chromosome arm map
Probe
CDO1312
Homology
AF295664_1 e-value: 9e-05 (AF295664) CBL-interacting protein kinase 9 [Arabidopsis thaliana] AF339147_1 e-value: 4e-33 (AF339147) SOS2-like protein kinase PKS5 [Arabidopsis thaliana]
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO1312 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
cdo1312a
[ Show all 29 ]
Probe
CDO1312
Locus
Xcdo1312-4B
[ Show all 33 ]
Synonym
Synonym HAR35_1447 HAR35_1448
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439333 BE439364 CDO1312_WHE05E12.s1
Polymorphism
CDO1312 XbaI
Linkage Group
1BL4BL4DL5AL
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.4
PCR size
1.4
GrainGenes Marker Report: CDO1312
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