GrainGenes Marker Report: CDO1335
Locus
CDO1335
Type
RFLP
Chromosome
5A 5B 5D
Chromosome Arm
5AS 5BS 5DS
Map
Oat-2009-KxO_5_30 107 Oat-2016-Consensus-6 104.5 Oat-2016-KxO_35 7.9 Oat-2018-Consensus_Mrg06 104.5 Oat-KxO/2003-30 12.2
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
CDO1335
Homology
BAA97014.1 e-value: 6e-15 (AB024032) gb|AAF56406.1~gene_id:K9P8.7~strong similarity to unknown protein [Arabidopsis thaliana]
Remark
Marker placement value = 3.78 cM on map Oat-KxO/2003-30 Marker is not a framework marker on map Oat-KxO/2003-30
Possible Orthologs
CDO1335(A)
[ Show all 7 ]
Probe
CDO1335
Locus
Xcdo1335-5B
[ Show all 8 ]
Synonym
Synonym HAR35_21031
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type
cDNA
Sequence
BE439176 BE439246 CDO1335_WHE03C09.r1 CDO1335_WHE03C09.s1
Polymorphism
CDO1335 EcoRI CDO1335 DraI
Linkage Group
5S
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.1
PCR size
1.1
GrainGenes Marker Report: CDO1335
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