GrainGenes Marker Report: CDO1338
Locus
CDO1338
Type
RFLP
Synonym
Other name cdo1338
Chromosome
4A 4D
Chromosome Arm
4DS
Map
Oat-2009-KxO_29_43 38 Oat-2016-Consensus-9 43.9 Oat-2018-Consensus_Mrg09 43.9 Oat-KxO/2003-29_43 44.9
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
CDO1338
Homology
BAB03027.1 e-value: 3e-24 (AP001297) glutamine-fructose-6-phosphate transaminase 2 [Arabidopsis thaliana]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-29_43 Marker is a framework marker on map Oat-KxO/2003-29_43
Possible Orthologs
CDO1338B
[ Show all 7 ]
Probe
CDO1338
Locus
Xcdo1338-5B
[ Show all 9 ]
Synonym
Other name CD1338 Synonym HAR35_7289
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA STS
PCR primers
R:ACAACTCCCCTTCACTGTTC
L:GCTTTCCTTTTGCAGCAACA
Amplification Conditions
Anneal at 45oC
Sequence
BE439211 CDO1338_WHE03G04.r1 AA231929 AA231928
Polymorphism
CDO1338 EcoRV CDO1338 EcoRI
Linkage Group
4S, 5L
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf leaf
Insert Size
1.2
PCR size
1.2
GrainGenes Marker Report: CDO1338
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
| ||||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
| |||||||||
|
|