GrainGenes Marker Report: CDO395
Locus
cdo395
Type
RFLP
Chromosome
3 (3H) 3A 3B 3D 3H
Chromosome Arm
3AS 3BS2AL 3DS 3HS
Map
Barley-Consensus-3H -30.5
[ Show all 13 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QFLDATE.2002-OxT_2
Map Data
3B Physical
[ Show all 14 ]
Probe
CDO395
Homology
NP_043787.1 e-value: 0.98 capsid protein [Human herpesvirus 7] YPT2_MAIZE e-value: 3e-14 GTP-BINDING PROTEIN YPTM2
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Remark
Number of populations contributing to the placement of CDO395 in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
CDO395(A)
[ Show all 15 ]
Probe
CDO395
Locus
cdo395
[ Show all 16 ]
Synonym
Synonym HAR35_16251 HAR35_16252 HAR35_29914
External Databases
DDBJ EMBL GenBank
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type
cDNA STS
PCR primers
ACC CCA TCG GTC TGT CTA TG
AAC TCG GTC GTT ACA AGA GC
Sequence
BE439071
[ Show all 7 ]
Polymorphism
CDO395 EcoRI Durums CDO395 EcoRI CDO395 EcoRV
Linkage Group
3S [b 3S] 3S [b 3S]
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1
PCR size
1
GrainGenes Marker Report: CDO395
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