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GrainGenes Marker Report: CDO506

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Locus	CDO506
Type	RFLP
Synonym	Synonym POPA2_1108
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Consensus-5H 132.9 [ Show all 6 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus [ Show all 8 ]
Probe	CDO506
Homology	A83106 e-value: 8.4 hypothetical protein PA4320 [imported] - Pseudomonas aeruginosa (strain PAO1) AAH04729 e-value: 8e-08 (BC004729) RIKEN cDNA 1810063P04 gene [Mus musculus]
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source	Kleinhofs, Andris
Remark	Number of populations contributing to the placement of CDO506 in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs	cdo506a [ Show all 12 ]
Probe	CDO506
Locus	CDO506 [ Show all 16 ]
Synonym	Synonym HAR35_17150 HAR35_41262
External Databases	DDBJ EMBL GenBank
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA STS
PCR primers	TCA TTC AGA GGA AGA ACT GC ATA GTG GAG CAA AGA CTG TC
Sequence	BE439286 BE439294 CDO506_WHE04G12.s1 CDO506
Polymorphism	CDO506 EcoRI CDO506 EcoRV
Linkage Group	[b 7L]
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.2 1.4 0.6