GrainGenes Marker Report: CDO63
Locus
CDO63
Type
RFLP
Synonym
Other name cdo63
Chromosome
4H
Chromosome Arm
4HL
Map
Barley-consensus-2003-4H 71.9
[ Show all 14 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Species
Avena sativa Avena sativa L.
Probe
CDO63
Homology
AC007764_13 e-value: 6e-07 (AC007764) F22C12.25 [Arabidopsis thaliana]
Reference
Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO63 in the Barley, Consensus 2006 DArT maps = 1 Marker placement value = 2.72 cM on map Oat-KxO/2003-5 Marker is not a framework marker on map Oat-KxO/2003-5
Possible Orthologs
CDO063 Xcdo63 Xcnl.CDO63 cdo63
Probe
CDO63
Locus
CDO63 Xcnl.CDO63 Xcdo63 CDO063 cdo63
Synonym
Synonym HAR35_3845
External Databases
DDBJ EMBL GenBank
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type
cDNA STS
PCR primers
GGCACGAGCGGATTTGTATC
CCACTGGCAGGATTTGCAAA
Sequence
BE439067
[ Show all 6 ]
Polymorphism
CDO63 EcoRI CDO63 EcoRV CDO63 DraI
Linkage Group
[b 4L]
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.1
PCR size
1.1
GrainGenes Marker Report: CDO63
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