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GrainGenes Marker Report: CDO795

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Locus
CDO795
Type
RFLP
Chromosome
4 (4H)
4H
Chromosome Arm
4HS
Map
Barley-consensus-2003-4H32.2
[ Show all 16 ]
[ Show Nearby Loci ]
QTL with Locus Marker
MetaQ.HT_4H_4
Map Data
Barley consensus
[ Show all 18 ]
Species
Hordeum vulgare
Probe
CDO795
QTL Linked with Locus
Sprouting 3
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO795 in the Barley, Consensus 2006 DArT maps = 2
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Possible Orthologs
cdo795a
[ Show all 12 ]
Probe
CDO795
Locus
CDO795
[ Show all 13 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
Sequence
AA231718
AA231719
Polymorphism
CDO795 EcoRI
CDO795 EcoRV
Linkage Group
[b 4L]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5