Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: EBmac0518

[Submit comment/correction]

Locus	EBmac0518
Type	Microsatellite
Chromosome	5H
Map	Barley-ConsensusFHB-5H 61.29 Hordeum-Consensus2007-SSR-5H 53.12 Hordeum-LxHs-5H 41
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, LxHs
Species	Hordeum spontaneum Hordeum vulgare
Probe	Bmac0518 EBmac518
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Lina x H. spontaneum Insert contains repeat (AC)5/(AC)5 Polymorphic Information Content (PIC) = 0.43 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmac0518
Probe for Locus	Bmac0518
Locus	EBmac0518 Bmac0518
Synonym	Other name EBmac518
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	SSR
PCR primers	ATATGGGTCACACTGAAAATC AGTTTGTTTTTACCAATAAGAGTG