Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: EBmac0684a

[Submit comment/correction]

Locus	EBmac0684a
Type	Microsatellite
Chromosome	5H
Map	Barley-ConsensusFHB-5H 86.63 Hordeum-Consensus2007-SSR-5H 73.79
	[ Show Nearby Loci ]
Map Data	Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB
Species	Hordeum spontaneum Hordeum vulgare
Probe	Ebmac0684
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark	Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Lina x H. spontaneum Insert contains repeat (TA)7(TG)11,(TG)11 (TTTG)5 Polymorphic Information Content (PIC) = 0.64 Developing laboratory = SCRI (R. Waugh)
Possible Orthologs	Bmac0684 [ Show all 7 ]
Probe for Locus	Ebmac0684
Locus	Ebmac0684.2H EBmac0684.6H EBmac0684b EBmac0684a
Reference	Hearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Ramsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Type	SSR
PCR primers	TTCCGTTGAGCTTTCATACAC ATTGAATCCCAACAGACACAA