Query (optional)   in Class  

GrainGenes Marker Report: GMS001

[Submit comment/correction]

Locus
GMS001
Type
Microsatellite
Synonym
SynonymGMS1
Chromosome
5H
Map
Barley-ConsensusFHB-5H194.51
[ Show all 10 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 10 ]
Species
Hordeum spontaneum
Hordeum vulgare
Probe
GMS1
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferencePillen K et al. (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars Theoretical and Applied Genetics 101:652-660.
ReferenceStruss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
Remark
Assigned to a barley chromosome by PCR screening of wheat barley addition lines
[ Show all 8 ]
Probe for Locus
GMS1
Locus
GMS0001
GMS001
GMS1
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceHearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
ReferenceWaugh R and Marshall DF (2005) Barley SSRs from the Scottish Crop Research Institute.
ReferenceStruss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
General Remarks
SSR motif: (CT)7TTT(CT)2
Type
SSR
PCR primers
CTGACCCTTTGCTTAACATGC
TCAGCGTGACAAACAATAAAGG
SSR size
134
Amplification Conditions
35-45 cycles: 1 min @ 94C, 1 min @ 60C, 2 min @ 72C; 1 cycle: 60 mins @ 72C.