GrainGenes Marker Report: HVM11
Locus
HVM11
Type
Microsatellite
Synonym
Correct name HVM011 Synonym HVM11
Chromosome
6H
Map
Hordeum-Consensus2005-SNP-6H 67.146 Hordeum-QTLConsensus-Abiotic-6H 67.15 Hordeum-QTLConsensus-Agronomic-6H 67.15 Hordeum-StMo-SNP-6H 58.07
[ Show Nearby Loci ]
QTL with Locus Marker
QFhs.HaTu-6H
Map Data
Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, Consensus 2005, SNP Barley, Steptoe x Morex, SNP
Probe
HVM11 
Liu Z-W et al. (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93:869-876.
Reference
Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Probe
HVM11
Locus
HVM11 HVM11a HVM11b HVM011
Reference
Remarks
Glucose-regulated protein (GRP94 homologue, heat-shock protein 90). Insert contains repeats (GGA)3, (GGA), and (GGA)2.
Type
PCR SSR
PCR primers
5' CCGGTCGGTGCAGAAGAG 3'
5' AAATGAAAGCTAAATGGGCGATAT 3' CCGGTCGGTGCAGAAGAG
AAATGAAAGCTAAATGGCGATAT
SSR size
0.181
Amplification Conditions
PCR comprised one cycle of 94oC for 3 min, 55oC for 2 min, and 72oC for 1.5 min, followed by 30 cycles of 94oC for 1 min, 55oC for 2 min, and 72oC for 1.5 min.
Sequence
X67960
Insert Enzyme
TaqI
Source Species
Hordeum vulgare
Source Germplasm
Old ZZ (barley)
DNA Origin
Size-fractionated genomic library screened with synthetic dinucleotide repeats (CA)10 and (GA)10.
GrainGenes Marker Report: HVM11
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