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GrainGenes Marker Report: HVWAXYG

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Locus	HvWaxyG
Type	Microsatellite
Chromosome	7H
Map	Barley-consensus-2003-7H 24.3 Hordeum-Consensus2007-SSR-7H 21.8
	[ Show Nearby Loci ]
Map Data	Barley consensus 2003 Barley, Consensus 2007, SSR
Species	Hordeum vulgare
Probe	HVWAXYG
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Becker J and Heun M (1995) Barley microsatellites: allele variation and mapping Plant Molecular Biology 27:835-845.
Data Source	Langridge, Peter J.
Remark	Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : Igri x Franka Insert contains repeat (AT)9 Developing laboratory = MPIZ (M. Heun)
Possible Orthologs	HvWaxy [ Show all 10 ]
Probe	HVWAXYG
Locus	M-HVWAXYG HvWaxyG
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Fu YB et al. (2007) Microsatellite variation in Avena sterilis oat germplasm Theoretical and Applied Genetics 114:1029-1038. Becker J and Heun M (1995) Barley microsatellites: allele variation and mapping Plant Molecular Biology 27:835-845.
Remarks	PCR size is expected size (kb) based on published sequence. Insert contains repeat (AT)9. In 369 Avena sterilis accessions there were 2 alleles of size 180-182 bp, PIC = 0.95.
Type	PCR SSR EST
PCR primers	5' TCCAATGGCATCTACAGGACGGCCAA 3' 5' GCAGGTTGAGCTGCGCAAAGTCGTCG 3' TCCAATGGCATCTACAGGACGGCCAA GCAGGTTGAGCTGCGCAAAGTCGTCG
SSR size	0.205
Sequence	X07931
Source Gene Class	Starch synthase
Source Species	Hordeum vulgare