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GrainGenes Marker Report: His3 (Hordeum)

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Gene	His3 (Hordeum)
Gene Class	Histone H3
Locus	His3B
Candidate Locus	His3B His3C His3D
Reference	Kleinhofs A and Kilian A (1994) DNA based markers in plants. 1. Cannell M et al. (1992) Chromosomal assignment of genes in barley using telosomic wheat-barley addition lines. Genome 35:17-23.
Chromosome	7H
Clone	pc h31-1
Info Source	von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Locus Associated with Gene	His3B
Type	Gene RFLP
Synonym	Synonym His3 (Hordeum)
Chromosome	1H
Map	Barley-Consensus2-1H 106.7 [ Show all 15 ]
	[ Show Nearby Loci ]
In QTL	QBgnm.StMo-1H.1 QBgsg.StMo-1H.3 QBgsk.StMo-1H QBgsk.StMo-1H.2 QMe.StMo-1H.4
Map Data	Barley consensus 2 [ Show all 15 ]
Probe	pc1-340
Associated Gene	His3 (Hordeum)
Candidate Gene	His3 (Hordeum)
Gene Class	Histone H3
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of His3B in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	His3A His3C His3D
Locus Candidate for Gene	His3B
Type	Gene RFLP
Synonym	Synonym His3 (Hordeum)
Chromosome	1H
Map	Barley-Consensus2-1H 106.7 [ Show all 15 ]
	[ Show Nearby Loci ]
In QTL	QBgnm.StMo-1H.1 QBgsg.StMo-1H.3 QBgsk.StMo-1H QBgsk.StMo-1H.2 QMe.StMo-1H.4
Map Data	Barley consensus 2 [ Show all 15 ]
Probe	pc1-340
Associated Gene	His3 (Hordeum)
Candidate Gene	His3 (Hordeum)
Gene Class	Histone H3
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of His3B in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	His3A His3C His3D
Locus Candidate for Gene	His3C
Type	Gene RFLP
Chromosome	2H
Map	Barley-Consensus2-2H 81.7 [ Show all 9 ]
	[ Show Nearby Loci ]
In QTL	QSss.StMo-2H.3
Map Data	Barley consensus 2 [ Show all 9 ]
Probe	pc1-340
Candidate Gene	His3 (Hordeum)
Reference	Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	His3A His3B His3D
Locus Candidate for Gene	His3D
Type	Gene RFLP
Synonym	Synonym pc1-340
Chromosome	6H
Map	Barley-Consensus2-6H 24.3 [ Show all 10 ]
	[ Show Nearby Loci ]
Map Data	Barley consensus 2 [ Show all 10 ]
Probe	pc1-340
Candidate Gene	His3 (Hordeum)
Reference	Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	His3A His3B His3C
Locus	His3 (Hordeum)
Synonym	Synonym His3B

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