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GrainGenes Marker Report: MWG555a

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Locus
MWG555a
Type
RFLP
Synonym
SynonymRrs2 (Hordeum)
Chromosome
7H
Map
Barley-Consensus2-7H6.1
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 13 ]
Species
Hordeum vulgare
Probe
MWG555
Associated Gene
Rrs2 (Hordeum)
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceSchweizer GF et al. (1995) RFLP markers linked to scald (Rhynchosporium secalis) resistance gene Rh2 in barley. Theoretical and Applied Genetics 90:920-924.
Data Source
Blake, Tom05.04.19
Remark
The MWG555A RFLP/STS is a gene marker for the Rrs2 (Hordeum) gene
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
MWG555
MWG555a-7H
MWG555b
MWG555b-3H


Probe for Locus
MWG555
Locus
MWG555
MWG555b
MWG555a
MWG555a-7H
MWG555b-3H
Reference
ReferenceGraner A et al. (1991) Construction of an RFLP map of barley Theoretical and Applied Genetics 83:250-256.
Type
Genomic
STS
STS primers
5' CGATTTGTTGGCACACATCA
5' GCAGTATCATCTCACCCGAA
STS size
213
Amplification Conditions
STS annealing temperature 52-55 oC
Sequence
AJ234503
MWG555-5
Linkage Group
Barley 1 (7H)
Insert Enzyme
PstI
Source Species
Hordeum vulgare
Insert Size
0.8