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GrainGenes Marker Report: Pina-D1 (Triticum)

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Gene	Pina-D1 (Triticum)
Synonym	Other name DQ363911.1 Simeone MC et al. (2006) Conserved regulatory elements identified from a comparative puroindoline gene sequence survey of Triticum and Aegilops diploid taxa Journal of Cereal Science 44:21-33. X69914 Gautier MF et al. (1994) Triticum aestivum puroindolines, two basic cystine rich seed proteins: cDNA sequence analysis and developmental gene expression Plant Molecular Biology 25:43-57. Synonym Pina-D1
Gene Class	Grain hardness Puroindolines and grain softness protein
Allele	Pina-D1a (Triticum) [ Show all 18 ]
Locus	Pina-D1
Candidate Locus	TraesCS5D02G004100.1
Reference	Cheng S et al. (2024) Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience Nature. [ Show all 12 ]
URL	DQ363911 at NCBI X69914 at NCBI Protocols for PCR determination of of Pina and Pinb by CAPs markers at MASWheat
Gene Product	puroindoline a
Chromosome	5D
Chromosome Arm	5DS Giroux MJ and Morris CF (1997) A glycine to serine change in puroindoline b is associated with wheat grain hardness and low levels of starch-surface friabilin. Theoretical and Applied Genetics 95:857-864.
Germplasm	Cultivar CAPITOLE Gautier MF et al. (1994) Triticum aestivum puroindolines, two basic cystine rich seed proteins: cDNA sequence analysis and developmental gene expression Plant Molecular Biology 25:43-57. Chinese Spring Simeone MC et al. (2006) Conserved regulatory elements identified from a comparative puroindoline gene sequence survey of Triticum and Aegilops diploid taxa Journal of Cereal Science 44:21-33.
Comment	See Pina-D1 record for ESTs. Curated genes in GrainGenes have the genus in parenthesis following the gene name
Clone	Pina-D1_INS TraesCS5D02G004100
Sequence	TraesCS5D02G004100.1
Data Curator	Blake, Victoria Carollo July2021
Locus Associated with Gene	Pina-D1
Type	Gene
Synonym	Other name Pina-D1a
Chromosome	5D 5D Triticum aestivum
Chromosome Arm	5DS
Map	Wheat-2014-Consensus-Ug99-Update_5D 8.02 Wheat-Composite2004-5D 0
	[ Show Nearby Loci ]
Map Data	Wheat, Composite, 2004 Wheat-2014-Consensus-Ug99-Update
Species	Triticum aestivum
Probe	Pina
Associated Gene	Pina-D1 (Triticum)
Gene Class	Grain hardness Puroindolines and grain softness protein
Reference	Beecher B et al. (2002) Expression of wild-type pinB sequence in transgenic wheat complements a hard phenotype Theoretical and Applied Genetics 105:870-877.
Possible Orthologs	Pina Pina-A
Locus Candidate for Gene	TraesCS5D02G004100.1
Type	gene
Synonym	Synonym TraesCS5D03G0008300
Chromosome	5D
Species	Triticum aestivum
Probe	TraesCS5D02G004100
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.

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