GrainGenes Marker Report: Xcdo1312
Locus
Xcdo1312
Type
RFLP
Chromosome
4D 5D
Chromosome Arm
4DL 5DL
Map
Ta-Physical-Gill-4ABD 91 Ta-Physical-Gill-4D 4.94 Ta-Physical-Gill-5ABD 93 Tm-Dubcovsky2-5A 97.7
[ Show Nearby Loci ]
Breakpoint Interval
4DL-12/0 4L-0.86-0.95 5L-0.85-1.00
Map Data
T. monococcum, DV92 x G3116 Wheat, Physical
Species
Triticum aestivum
Probe
CDO1312
Homology
AF295664_1 e-value: 9e-05 (AF295664) CBL-interacting protein kinase 9 [Arabidopsis thaliana] AF339147_1 e-value: 4e-33 (AF339147) SOS2-like protein kinase PKS5 [Arabidopsis thaliana]
Reference
Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus was completely linked to Xucd103(Esi4), Xksuc2-5A, and Xsbg366. Segregation data are listed under Xucd103(Esi4).
Possible Orthologs
CDO1312
[ Show all 29 ]
Probe for Locus
CDO1312
Locus
Xcdo1312-4B
[ Show all 33 ]
Synonym
Synonym HAR35_1447 HAR35_1448
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439333 BE439364 CDO1312_WHE05E12.s1
Polymorphism
CDO1312 XbaI
Linkage Group
1BL4BL4DL5AL
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.4
PCR size
1.4
GrainGenes Marker Report: Xcdo1312
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