GrainGenes Marker Report: Xcdo400-5B
Locus
Xcdo400-5B
Type
RFLP
Chromosome
5B
Chromosome Arm
5BL
Map
5BL, CS, 0.75-0.79 interval 5.1 Ta-Physical-Sarma-5B 0.69
[ Show Nearby Loci ]
Breakpoint Interval
5BL14-0.75-0.76 5BL11-0.59-0.79
Map Data
5BL, CS, 0.75-0.79 interval Wheat, Physical, Group 5
Species
Triticum aestivum
Probe
CDO400
Homology
BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Reference
Faris JD et al. (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154:823-835.
Possible Orthologs
cdo400
[ Show all 8 ]
Probe for Locus
CDO400
Locus
CDO400b
[ Show all 12 ]
Synonym
Synonym HAR35_19904
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439060
[ Show all 6 ]
Polymorphism
CDO400 DraI
Linkage Group
1L, 5L
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
0.8
PCR size
0.8
GrainGenes Marker Report: Xcdo400-5B
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