GrainGenes Marker Report: Xcdo541
Locus
Xcdo541
Type
RFLP
Chromosome
4D
Chromosome Arm
4DL
Map
Avena-Sorrells-F 52.3 Ta-Physical-Gill-4ABD 71 Ta-Physical-Gill-4D 3.58 Tm-Dubcovsky2-4A 3.4
[ Show Nearby Loci ]
Breakpoint Interval
4DL-13/4DL-2 4L-0.70-0.71
Map Data
Diploid Oat, Cornell2 Oat, KxO T. monococcum, DV92 x G3116 Wheat, Physical
Species
Triticum aestivum
Probe
CDO541
Homology
NP_085578.1 e-value: 5.4 orf205 [Arabidopsis thaliana]
Image
CDO541 KO autoradiogram
Reference
Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
CDO541 Xcnl.CDO541
Probe for Locus
CDO541
Locus
CDO541 Xcdo541 Xcnl.CDO541
Synonym
Synonym HAR35_18511
External Databases
DDBJ EMBL GenBank
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type
cDNA STS
PCR primers
ACA GAA ATG ACT CAC ACA GG
AGA AAC ATA ACC GCA ACA TC
Sequence
BE439139 CDO541_WHE2H0111 CDO541_WHE2H0112 CDO541
Polymorphism
CDO541 EcoRI
Linkage Group
4L [b 4L]
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5
GrainGenes Marker Report: Xcdo541
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