GrainGenes Marker Report: Xcdo677
Locus
Xcdo677
Type
RFLP
Chromosome
5D
Chromosome Arm
5DS
Map
Oat-1997-KxO-QTL_UL.6 0 Ta-Physical-Gill-5ABD -40 Ta-Physical-Gill-5D -1.36 Tm-Dubcovsky2-5A 0
[ Show Nearby Loci ]
QTL with Locus Marker
QHTNV.1997-KxO_UL.6 QHTV.1997-KxO_UL.6
Breakpoint Interval
5DS-1/5DS-4 5S-0.34-0.45
Map Data
Oat, KxO Oat-1997-KxO-QTL T. monococcum, DV92 x G3116 Wheat, Physical
Species
Triticum aestivum
Probe
CDO677
Homology
BAB11619.1 e-value: 2e-10 (AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Image
CDO677 KO autoradiogram
Reference
Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus was completely linked to Xcdo749, X5SDna-5A, Xpsr326, Xwg341, Xpsr929, Xpsr628, Xpsr118, XksuH8, Xcdo1338, Xpsr360, Xwg541, Xcdo1049, Xbcd204, Xmwg645, Xabc706, and Xtam40. Segregation data are listed under Xcdo749.
Possible Orthologs
CDO677
[ Show all 9 ]
Probe for Locus
CDO677
Locus
Xcdo677
[ Show all 10 ]
Synonym
Synonym HAR35_11857 HAR35_28766
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439194 CDO677_WHE03B02.r1
Polymorphism
CDO677 EcoRI CDO677 EcoRV CDO677 DraI
Linkage Group
5S
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa Triticum aestivum
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5
GrainGenes Marker Report: Xcdo677
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