Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xcfd88-4A

[Submit comment/correction]

Locus	Xcfd88-4A
Type	Microsatellite
Chromosome	4A
Map	Chinese_Spring_Deletion_SSR_4A 0.625 Ta-SSR-2004-4A 60.3 Ta-Synthetic/Opata-GPW-4A 96.8
	[ Show Nearby Loci ]
Breakpoint Interval	4AL13-0.59-0.66
Map Data	Wheat, Consensus SSR, 2004 Wheat, Physical, SSR Wheat, Synthetic x Opata, GPW
Probe	CFD88
Reference	Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs	Xcfd88 cfd88
Probe for Locus	CFD88
Locus	Xcfd88-4A Xcfd88 cfd88
Reference	Guyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
General Remarks	Quality Score = C Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (CCG)5 Regularity of motif is perfect
Type	PCR SSR
PCR primers	Forward 5' TAGGCATAGTTTTGGGCCTG 3' Reverse 5' GGTAGAAGGAAGCTTCGGGA 3'
SSR size	238
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	4A
Source Species	Aegilops tauschii