GrainGenes Marker Report: Xgwm617-5A
Locus
Xgwm617-5A
Type
Microsatellite
Chromosome
5A
Chromosome Arm
5AL
Map
Chinese_Spring_Deletion_SSR_5A 0.675 Ta-SSR-2004-5A 76.3 Ta-Synthetic/Opata-BARC-5A 57.6 Ta-Synthetic/Opata-SSR-5A 95.4 Triticum-WxM-FHB-QTL-5A 94.4
[ Show Nearby Loci ]
Breakpoint Interval
5AL10-0.57-0.78
Map Data
Wheat, Consensus SSR, 2004 Wheat, Physical, SSR Wheat, Synthetic x Opata, BARC Wheat, Synthetic x Opata, SSR Wheat, WxM, FHB QTL
Probe
WMS617
Reference
Data Source
Roeder, Marion S. 98.09.15
Remark
In Map Ta-Synthetic/Opata-SSR-5A, the interval most likely to contain locus is between Xbcd1235.1 and Xbcd183
Possible Orthologs
Xgwm617
[ Show all 13 ]
Probe for Locus
WMS617
Locus
Xgwm617-6A
[ Show all 14 ]
Reference
Roder MS et al. (1998) A microsatellite map of wheat Genetics 149:2007-2023.
General Remarks
Insert contains repeat (GA)43 PRIMER SEQUENCE IS AVAILABLE FOR PUBLIC RESEARCH ONLY. REQUESTS FOR COMMERCIAL USE SHOULD BE DIRECTED TO M. ROEDER.
Type
PCR SSR
PCR primers
5' GATCTTGGCGCTGAGAGAGA 3'
5' CTCCGATGGATTACTCGCAC 3'
Amplification Conditions
3 min at 94 deg C; 45 cycles with 1 min at 94 deg C, 1 min at 60 deg C, and 2 min at 72 deg C; and a final extension step of 10 min at 72 deg C
Polymorphism
WMS617
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
GrainGenes Marker Report: Xgwm617-5A
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