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GrainGenes Marker Report: Xwmc391

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Locus
Xwmc391
Type
Microsatellite
Synonym
Other nameXAWM391
Chromosome
1B
Map
Wheat-Composite2004-1B28
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Map Data
Wheat, Composite, 2004
Probe
WMC391



Probe for Locus
WMC391
Locus
Xwmc391
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
General Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 10h10
Donor: Jacquemin, Gembloux
Trimmed to Rsa1 at 5' end , 3' end not located. Bases 127 to 191 (complement) show homology to 3A1 bases 668 to 732 (65 in longest run, maxScore = 124). (CT)16 24 to 55. Bases 127 to 179 show homology to 24c2 bases 124 to 176 (53 in longest run, maxScore = 102), duplicate, 10h10 has priority.
Type
PCR
SSR
PCR primers
Forward gTAccAgTAgcTATgTgTTTgAT at 1 length 23 bases, Tm 55
Reverse TTAcAAgAgAgTAgAggggAAg at 124 length 23 bases, Tm 56
SSR size
145 bases expected, Chinese Spring
Amplification Conditions
51C anneal, smear.
Sequence
WMC391
Source Species
Triticum aestivum