Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xwmc406-1B

[Submit comment/correction]

Locus	Xwmc406-1B
Type	Microsatellite
Chromosome	1B
Map	CS/SQ1-1B 32 Kofa/UC1113-1B 15.4 Ta-SSR-2004-1B 23.5
	[ Show Nearby Loci ]
Map Data	Durum wheat, Kofa x UC1113 Durum wheat, Svevo x Ciccio Wheat, Chinese Spring x SQ1 Wheat, Consensus SSR, 2004
Probe	WMC406
Reference	Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs	Xwmc406 wmc406 wmc406-1B
Probe for Locus	WMC406
Locus	Xwmc406-1B Xwmc406 wmc406 wmc406-1B
Reference	Somers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
General Remarks	Wheat Microsatellite Consortium Project 1, Plate reference 22b12 Donor: Romestant, RAGT Location from nullisomic/tetrasomic (Daryl Somers, AgCanada, Feb 2001) : 227 bases located on 1B Trimmed to Ssp1 at both ends of insert. (CA)16 188 to 219.
Type	PCR SSR
PCR primers	Forward TATgAgggTcggATcAATAcAA at 116 length 22 bases, Tm 61 Reverse cgAgTTTAcTgcAAAcAAATgg at 311 length 22 bases, Tm 61
SSR size	217 bases expected, Chinese Spring
Amplification Conditions	61C anneal, polymorphic on acrylamide (though weak).
Sequence	WMC406
Source Species	Triticum aestivum