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GrainGenes Marker Report: cdo673a

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Locus
cdo673a
Type
RFLP
Map
Oat-2004-KxO-RGA_KO7_10_2862.82
Oat-2006-KxO-RGA_KO7_10_280
Oat-KxO/2003-7_10_2870.4
RGA-2013_KO7_10_2870
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2004-KxO-RGA
Oat-2006-KxO-RGA
Oat-2013-KxO-RGA
Probe
CDO673
Homology
AC012188_16e-value: 2e-23(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
D81906e-value: 2.1probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491]
AC012188_16e-value: 2e-21(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-7_10_28
Marker is a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
CDO673
[ Show all 8 ]
Probe for Locus
CDO673
Locus
CDO673
[ Show all 9 ]
Synonym
SynonymHAR35_5301
External Databases
DDBJ
EMBL
GenBank
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
STS
PCR primers
GCC ATT GGT ATT GCG AGA GG
ACG AGC GTC AGT CGG TCA CT
Sequence
BE439193
[ Show all 8 ]
Linkage Group
1LS
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.1
PCR size
1.1