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GrainGenes Marker Report: k00240

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Locus	k00240
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 313.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak21j02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/C SNP structure (UNICODE) = GCTCTTTGTCSGTGCCTTGCA Parent 1 SNP sequence = GCTCTTTGTCGGTGCCTTGCA Parent 2 SNP sequence = GCTCTTTGTCCGTGCCTTGCA
Probe for Locus	baak21j02
Locus	k00240
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains similarity to pherophorin~gene_id:T5M7.14 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCTAGCCATGCTTCAAAAGG Right 5' - AGTGAAGAGGAGGTGGCAGA
Sequence	BJ546531
PCR size	369