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GrainGenes Marker Report: k00341

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Locus	k00341
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 113.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak22o23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = T/C SNP structure (UNICODE) = GAAAAGAGTCYGCACCTTATC Parent 1 SNP sequence = GAAAAGAGTCTGCACCTTATC Parent 2 SNP sequence = GAAAAGAGTCCGCACCTTATC
Probe for Locus	baak22o23
Locus	k00341
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative CEO protein [Oryza sativa (japonica cultivar-group)] gb AAL58179.1 putative CEO protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGAGCAGCAGATACCGCTTG Right 5' - CGACTCAGTTGAGAATGCCA
Sequence	BJ456682
PCR size	384