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GrainGenes Marker Report: k00449

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Locus	k00449
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 167.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak29d10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = AGCATTGTCARTTCTTGGACG Parent 1 SNP sequence = AGCATTGTCAGTTCTTGGACG Parent 2 SNP sequence = AGCATTGTCAATTCTTGGACG
Probe for Locus	baak29d10
Locus	k00449
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative male sterility 1 protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAGCGGGAAAAGTTCACAC Right 5' - GTGGTGTCATTGTGCCTGAA
Sequence	CA014706
PCR size	356