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GrainGenes Marker Report: k00543

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Locus	k00543
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 18.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak32f06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = T/C SNP structure (UNICODE) = CGAACGACGGYTTCACGCGAG Parent 1 SNP sequence = CGAACGACGGTTTCACGCGAG Parent 2 SNP sequence = CGAACGACGGCTTCACGCGAG
Probe for Locus	baak32f06
Locus	k00543
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative puromycin-sensitive aminopeptidase (PSA) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACTCTTCCAGCCACCTACGA Right 5' - GATCCAACAGGACGAGGAGA
Sequence	BU989871
PCR size	403