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GrainGenes Marker Report: k00561

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Locus	k00561
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 243.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak33o23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = GATCATGGACRCAACATAAAC Parent 1 SNP sequence = GATCATGGACGCAACATAAAC Parent 2 SNP sequence = GATCATGGACACAACATAAAC
Probe for Locus	baak33o23
Locus	k00561
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = beta 5 subunit of 20S proteasome [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCATCCCTTGTCGAAGATA Right 5' - TATAGTGGAGTTGGGGGTGC
Sequence	BJ546128
PCR size	490