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GrainGenes Marker Report: k00782

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Locus	k00782
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 111.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak44a23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = AAAATTCTATRTTATGCTAGG Parent 1 SNP sequence = AAAATTCTATATTATGCTAGG Parent 2 SNP sequence = AAAATTCTATGTTATGCTAGG
Probe for Locus	baak44a23
Locus	k00782
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = similar to Arabidopsis thaliana transport inhibitor response 1 (TIR1) (T48087) [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TTTCTGTCACGGACCCATTT Right 5' - CATCGTCAGGCTCCGTAAAC
Sequence	BJ461212
PCR size	352