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GrainGenes Marker Report: k00793

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Locus	k00793
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 203.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak43o03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = CGGGGATGATRTAGTCTTTAT Parent 1 SNP sequence = CGGGGATGATGTAGTCTTTAT Parent 2 SNP sequence = CGGGGATGATATAGTCTTTAT
Probe for Locus	baak43o03
Locus	k00793
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACACCATCATCAATCCACG Right 5' - GCTCTTGCACGGAGTCTCTT
Sequence	BJ461171
PCR size	426