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GrainGenes Marker Report: k01117

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Locus	k01117
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 162.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal20e03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/T SNP structure (UNICODE) = GGGATATCAGWCTCTGAATCA Parent 1 SNP sequence = GGGATATCAGACTCTGAATCA Parent 2 SNP sequence = GGGATATCAGTCTCTGAATCA
Probe for Locus	baal20e03
Locus	k01117
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0677H08.13 [Oryza sativa (japonica cultivar-group)] dbj BAB89798.2 P0677H08.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCAATGCTCATTCGTCAAGA Right 5' - GCGATGGAAGTCCAAGCTAC
Sequence	BJ474624
PCR size	352