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GrainGenes Marker Report: k01163

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Locus	k01163
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 173.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal33m18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = CACCATCAGAYGTGCTGCCTG Parent 1 SNP sequence = CACCATCAGACGTGCTGCCTG Parent 2 SNP sequence = CACCATCAGATGTGCTGCCTG
Probe for Locus	baal33m18
Locus	k01163
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative zinc finger protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAAAGATCTACGGTGGACGG Right 5' - CCACCAATGCCTAGCACTTT
Sequence	AV936046
PCR size	363