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GrainGenes Marker Report: k01516

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Locus	k01516
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 238.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal9m13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = GTACACCTATRCTACAAGGAC Parent 1 SNP sequence = GTACACCTATGCTACAAGGAC Parent 2 SNP sequence = GTACACCTATACTACAAGGAC
Probe for Locus	baal9m13
Locus	k01516
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTCTTGTTTGGTCCACCGT Right 5' - GCGCACACCTATCCTTGATT
Sequence	AV833029
PCR size	352