Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02395

[Submit comment/correction]

Locus	k02395
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 301
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1b01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = TCGCCAGCTCRCCGACACCAC Parent 1 SNP sequence = TCGCCAGCTCGCCGACACCAC Parent 2 SNP sequence = TCGCCAGCTCACCGACACCAC
Probe for Locus	bags1b01
Locus	k02395
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 6b-interacting protein 1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATCAACTATGCACGCAACCA Right 5' - AAGGTTTCAGCGGTCAGAGA
Sequence	AV921120
PCR size	358